Changes

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Decompose multiallelic variants in a [http://www.1000genomes.org/wiki/analysis/variant-call-format/vcf-variant-call-format-version-42 VCF]  file.  If the VCF file has genotype fields GT,PL or GL, they are

Decompose multiallelic variants in a [http://www.1000genomes.org/wiki/analysis/variant-call-format/vcf-variant-call-format-version-42 VCF]  file.  If the VCF file has genotype fields GT,PL or GL, they are

modified to reflect the change in alleles.  All other genotype fields are removed.

modified to reflect the change in alleles.  The PL and GL fields are only output if the ploidy is 2.  All other genotype fields are removed.

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