Changes

From Genome Analysis Wiki
Jump to navigationJump to search
18 bytes removed ,  16:06, 12 April 2010
no edit summary
Line 85: Line 85:  
| Returns the BAM block size of the record.
 
| Returns the BAM block size of the record.
 
|-
 
|-
| <code>const char* SamRecord::getReferenceName(SamFileHeader& header)</code>
+
| <code>const char* SamRecord::getReferenceName()</code>
 
| Returns the reference sequence name (SAM format).
 
| Returns the reference sequence name (SAM format).
 
|-
 
|-
Line 115: Line 115:  
| Returns the length of the read.
 
| Returns the length of the read.
 
|-
 
|-
| <code>const char* SamRecord::getMateReferenceName(SamFileHeader& header)</code>
+
| <code>const char* SamRecord::getMateReferenceName()</code>
 
| Returns the mate reference sequence name (SAM format).  Returns the mate reference sequence name even if it is the same as the reference sequence name.
 
| Returns the mate reference sequence name (SAM format).  Returns the mate reference sequence name even if it is the same as the reference sequence name.
 
|-
 
|-
| <code>const char* SamRecord::getMateReferenceNameOrEqual(SamFileHeader& header)</code>
+
| <code>const char* SamRecord::getMateReferenceNameOrEqual()</code>
| Returns the mate reference sequence name (SAM format).  Returns the mate reference sequence name, unless it is the same as the reference sequence name, then an "=" is returned..
+
| Returns the mate reference sequence name (SAM format).  Returns the mate reference sequence name, unless it is the same as the reference sequence name, then an "=" is returned, unless the name is "*", then "*" is returned.
 
|-
 
|-
 
| <code>int32_t SamRecord::getMateReferenceID()</code>
 
| <code>int32_t SamRecord::getMateReferenceID()</code>

Navigation menu