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Revision as of 20:13, 15 June 2014
, 20:13, 15 June 2014→Records
FORMAT : format field labels for the genotype columns.
FORMAT : format field labels for the genotype columns.
0/0:0,9,108:9:3,0,6:10 : genotype information.
0/0:0,9,108:9:3,0,6:10 : genotype information.
===INFO field===
The information field are as follows:
AC=32 : alternate allele count
AN=116 : total number of alleles
AF=0.275862 : allele frequency based on AC/AN
GC=32,20,6 : genotype counts for 0/0, 0/1, 1/1
GN=58; : total number of genotypes
GF=0.551724,0.344828,0.103448 : genotype frequencies
NS=58 : no. of samples.
HWEAF=0.275797: Genotype likelihood based estimation of the allele frequency assuming Hardy Weinberg equilibrium.
HWEGF=0.52447,0.399466,0.0760642 : genotype frequency derived from HWEAF
MLEAF=0.27366: genotype likelihood based estimation of the genotype frequency
MLEGF=0.494275,0.464129,0.0415952 : genotype frequency derived from MLEAF
HWE_LLR=-0.453098 : log likelihood ratio of HWE test
HWE_LPVAL=-1.0755 : log p value of HWE test
HWE_DF=1 : degrees of freedom of the HWE test
FIC=-0.0718807;AB=0.6129
===GENOTYPE field===
=Tools=
=Tools=
