1,102
edits
Changes
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Revision as of 20:23, 15 June 2014
, 20:23, 15 June 2014→GENOTYPE field
===GENOTYPE field===
===GENOTYPE field===
0/0: homozygous reference chosen based on in PL.
0,9,108: PHRED scaled genotype likelihoods
9: no. of reads covering this variant
3,0,6: allele depth
counts of reads supporting the reference allele, the alternative allele and neither.
The last category might be due to insufficient coverage of the read over the locus
or simply a mis specified allele.
10 : genotype quality.
=Tools=
=Tools=
