Changes

The information field are as follows:

The information field are as follows:

   AC=32 : alternate allele count

   AC=32       : alternate allele count

   AN=116 : total number of alleles

   AN=116       : total number of alleles

   AF=0.275862 : allele frequency based on AC/AN

   AF=0.275862 : allele frequency based on AC/AN

   GC=32,20,6 : genotype counts for 0/0, 0/1, 1/1

   GC=32,20,6   : genotype counts for 0/0, 0/1, 1/1

   GN=58;   : total number of genotypes   

   GN=58;       : total number of genotypes   

   GF=0.551724,0.344828,0.103448 : genotype frequencies

   GF=0.55,0.34,0.10 :   genotype frequencies based on GC

   NS=58 : no. of samples.

   NS=58       : no. of samples.

   HWEAF=0.275797: Genotype likelihood based estimation of the allele frequency assuming Hardy Weinberg equilibrium.

   HWEAF=0.28                    : genotype likelihood based estimation of the allele frequency assuming Hardy Weinberg equilibrium.

   HWEGF=0.52447,0.399466,0.0760642 : genotype frequency derived from HWEAF

   HWEGF=0.52,0.40,0.08 : genotype frequency derived from HWEAF

   MLEAF=0.27366: genotype likelihood based estimation of the genotype frequency

   MLEAF=0.27: genotype likelihood based estimation of the genotype frequency

   MLEGF=0.494275,0.464129,0.0415952 : genotype frequency derived from MLEAF

   MLEGF=0.49,0.46,0.04 : genotype frequency derived from MLEAF

   HWE_LLR=-0.453098 : log likelihood ratio of HWE test

   HWE_LLR=-0.45 : log likelihood ratio of HWE test

   HWE_LPVAL=-1.0755 : log p value of HWE test

   HWE_LPVAL=-1.08 : log p value of HWE test

   HWE_DF=1 : degrees of freedom of the HWE test

   HWE_DF=1 : degrees of freedom of the HWE test

   FIC=-0.0718807;AB=0.6129

   FIC=-0.07:  genotype likelihood based inbreeding coefficient

  AB=0.61 : genotype likelihood based allele balance

===GENOTYPE field===

===GENOTYPE field===