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Sequencing Workshop Analysis of Indels (view source)

Revision as of 21:43, 15 June 2014

3 bytes removed ,  21:43, 15 June 2014
→‎Summary
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vt peek all.genotypes.bcf  
 
vt peek all.genotypes.bcf  
   −
options:    input VCF file            run/final/all.genotypes.bcf
   
   stats: no. of samples                    :        62
 
   stats: no. of samples                    :        62
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      no. of chromosomes                :          1 <br>
+
        no. of chromosomes                :          1 <br>
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      no. Indels                        :        720
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        no. Indels                        :        720
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          2 alleles (ins/del)            :            720 (0.84) [328/392]
+
            2 alleles (ins/del)            :            720 (0.84) [328/392] #(insertion deletion ratio) [#insertions, #deletions]
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          >=3 alleles (ins/del)          :              0 (-nan) [0/0]
+
            >=3 alleles (ins/del)          :              0 (-nan) [0/0] <br>
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      no. of observed variants          :        720 <br>
+
        no. of observed variants          :        720
    
== Comparison with other data sets ==
 
== Comparison with other data sets ==
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