Changes

Sequencing Workshop Analysis of Indels (view source)

451 bytes removed , 21:59, 15 June 2014

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UMICH's algorithm for normalization has been adopted by Petr Danecek in bcftools and is also used in GKNO.

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~~==to document==~~

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* Annotation of STRs is really important. Show example of a deceptive single base pair variant

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* Mendelian analysis

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* AFS

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* Can check concordance of genotypes between callers - partitiion

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* Type of Indels - homopolymer types and STR types and isolated, Adjacent SNPs ,Adjacent MNPs,Clumping variants

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* genotype likelihood concordance

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* concordance stratified by indel length or tract length

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* mendelian concordance by tract length

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