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29 bytes added
, 09:51, 17 June 2014
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| It is usually useful to examine the call sets against known data sets for the passed variants. | | It is usually useful to examine the call sets against known data sets for the passed variants. |
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− | ${GC}/bin/vt profile_indels -g indel.reference.txt -r hs37d5.fa ${OUT}/final/all.genotypes.vcf.gz -i 22:36000000-37000000 -f "PASS"
| + | ${GC}/bin/vt profile_indels -g ${VTREF}/indel.reference.txt -r ${REF}/human.g1k.v37.chr22.fa ${OUT}/final/all.genotypes.vcf.gz -i 22:36000000-37000000 -f "PASS" |
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| data set | | data set |