From Genome Analysis Wiki
Jump to navigationJump to search
14 bytes removed
, 17:05, 9 July 2014
Line 78: |
Line 78: |
| * When PED file has genotypes saved, there is no need for a VCF file as input. | | * When PED file has genotypes saved, there is no need for a VCF file as input. |
| * RMW takes PED/DAT file in Merlin format. Please refer to [http://www.sph.umich.edu/csg/abecasis/merlin/tour/input_files.html PED/DAT format description] for details. | | * RMW takes PED/DAT file in Merlin format. Please refer to [http://www.sph.umich.edu/csg/abecasis/merlin/tour/input_files.html PED/DAT format description] for details. |
− | * PED file requires "dummy" parents to be included in the pedigree file. To check the integrity of your PED/DAT file, please use [http://www.sph.umich.edu/csg/abecasis/PedStats '''pedstats''']. To add dummy parents into the pedigree, please use the [Media:preprocess.merlin.ped.pl '''perl script'']. | + | * PED file requires "dummy" parents to be included in the pedigree file. To check the integrity of your PED/DAT file, please use [http://www.sph.umich.edu/csg/abecasis/PedStats '''pedstats''']. To add dummy parents into the pedigree, please use the [Media:Script.tgz '''perl script'']. |
| * An example PED file is in the following: | | * An example PED file is in the following: |
| 1 1 0 0 1 1.5 1 23 A A A A A A A A A A | | 1 1 0 0 1 1.5 1 23 A A A A A A A A A A |