3,045
edits
Changes
From Genome Analysis Wiki
Jump to navigationJump to searchSeqShop: Estimates of Genetic Ancestry Practical, June 2014 (view source)
Revision as of 09:40, 10 July 2014
, 09:40, 10 July 2014→Setup when running on your own outside of the SeqShop Workshop
<li>Using bash (replace the paths below with the appropriate paths):</li>
<li>Using bash (replace the paths below with the appropriate paths):</li>
<div class="mw-collapsible-content">
<div class="mw-collapsible-content">
<pre>export REF=$SS/ancestry/ref export HGDP=$SS/ancestry/HGDP export BAM=$SS/ancestry/bams</pre>
:<pre>export REF=$SS/ancestry/ref export HGDP=$SS/ancestry/HGDP export BAM=$SS/ancestry/bams</pre>
</div>
</div>
</div>
</div>
<li>Using tcsh (replace the paths below with the appropriate paths):</li>
<li>Using tcsh (replace the paths below with the appropriate paths):</li>
<div class="mw-collapsible-content">
<div class="mw-collapsible-content">
<pre>setenv REF $SS/ancestry/ref setenv HGDP $SS/ancestry/HGDP setenv BAM $SS/ancestry/bams</pre>
:<pre>setenv REF $SS/ancestry/ref setenv HGDP $SS/ancestry/HGDP setenv BAM $SS/ancestry/bams</pre>
</div>
</div>
</div>
</div>
</div>
</div>
</div>
</div>
== Getting started ==
== Getting started ==
