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, 09:58, 2 February 2017
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| == Download EMMAX == | | == Download EMMAX == |
− | The latest release of EMMAX can be downloaded at [http://www.sph.umich.edu/csg/kang/emmax/download/index.html EMMAX Download Page] | + | The latest release of EMMAX can be downloaded at [http://csg.sph.umich.edu//kang/emmax/download/index.html EMMAX Download Page] |
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| == Key Instructions == | | == Key Instructions == |
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| A. We believe that BN matrix is more robust to construct the empirical kinship matrix. Also we recommend to use call rate 95% threshold and MAF threshold of 0.01 when preparing the data. | | A. We believe that BN matrix is more robust to construct the empirical kinship matrix. Also we recommend to use call rate 95% threshold and MAF threshold of 0.01 when preparing the data. |
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| + | === NaN in the kinship file === |
| + | Q. I am observing a series of -nan in the kinship matrix. What is the problem? |
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| + | A. Most likely, monomorphic SNPs would create such a problem. Typically, MAF threshold such as 1% is used. |
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| === Citing EMMAX === | | === Citing EMMAX === |