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, 15:15, 8 August 2014
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| == BAM files == | | == BAM files == |
− | The BAM files need to be duplicate-marked and base-quality recalibrated in order to obtain high quality SNP calls. Generating these BAM files from original FASTQs is documented elsewhere as part of the [[Alignment Pipeline]] of gotCloud. | + | The BAM files need to be duplicate-marked and base-quality recalibrated in order to obtain high quality SNP calls. Generating these BAM files from original FASTQs is documented as part of the [[Alignment Pipeline]] of GotCloud. |
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| == Index File == | | == Index File == |