From Genome Analysis Wiki
Jump to navigationJump to search
No change in size
, 11:36, 5 September 2014
Line 199: |
Line 199: |
| #variants that are normalized will be annotated with an OLD_VARIANT info tag. | | #variants that are normalized will be annotated with an OLD_VARIANT info tag. |
| #CHROM POS ID REF ALT QUAL FILTER INFO | | #CHROM POS ID REF ALT QUAL FILTER INFO |
− | 19 29238772 . C G . PASS VT=SNP;OLD_VARIANT=19:29238771:TC,TG | + | 19 29238772 . C G . PASS VT=SNP;OLD_VARIANT=19:29238771:TC/TG |
− | 20 60674709 . GCCCAGCCCCAC G . PASS VT=INDEL;OLD_VARIANT=20:60674718:CACCCCAGCCCC,C | + | 20 60674709 . GCCCAGCCCCAC G . PASS VT=INDEL;OLD_VARIANT=20:60674718:CACCCCAGCCCC/C |
| | | |
| #this shows a sample output with the normalization operations that were used | | #this shows a sample output with the normalization operations that were used |