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#:#*# filtered.vcf.gz file: <code>vcfs/chr22/chr22.filtered.vcf.gz</code>
#:#*# filtered.vcf.gz file: <code>vcfs/chr22/chr22.filtered.vcf.gz</code>
#:#*# summary information: <code>vcfs/chr22/chr22.filtered.sites.vcf.summary</code>
#:#*# summary information: <code>vcfs/chr22/chr22.filtered.sites.vcf.summary</code>
# Look at the filtered file.
#: <pre>zless -S output/vcfs/chr22/chr22.filtered.vcf.gz</pre>
#: Scroll down some: [[File::screenshot]]
## Check for the expected SNP at 22:36661906
##:<pre>tabix output/vcfs/chr22/chr22.filtered.vcf.gz 22:36661906 |head -1</pre>
#:[[File::screenshot]]
# Look at the summary information
#:<pre>cat output/vcfs/chr22/chr22.filtered.sites.vcf.summary</pre>
#:[[File::screenshot]]
