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− | Sequence Analysis Workshop June 16-20, 2014: http://seqshop.sph.umich.edu/ | + | '''Sequence Analysis Workshop June 16-20, 2014: http://seqshop.sph.umich.edu/ ''' |
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| + | '''Note:''' new versions of these practicals are available at: [[SeqShop: December 2014]] |
| + | * The ones here are the original ones from the June workshop (updated to be run from elsewhere) |
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| {| class="wikitable" cellpadding=5 | | {| class="wikitable" cellpadding=5 |
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| | [[Media:Mapping and assembly.pdf|Sequence Mapping and Assembly]] | | | [[Media:Mapping and assembly.pdf|Sequence Mapping and Assembly]] |
− | | [[SeqShop: Sequence Mapping and Assembly Practical]] | + | | [[SeqShop: Sequence Mapping and Assembly Practical, June 2014]] |
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| ! style="background:#ABE" | Tuesday Lecture !! style="background:#ABE" | Practical | | ! style="background:#ABE" | Tuesday Lecture !! style="background:#ABE" | Practical |
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| | [[Media:SNPcalling.pdf|Variant Calling and Filtering for SNPs]] | | | [[Media:SNPcalling.pdf|Variant Calling and Filtering for SNPs]] |
− | | [[SeqShop: Variant Calling and Filtering for SNPs Practical]] | + | | [[SeqShop: Variant Calling and Filtering for SNPs Practical, June 2014]] |
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| | [[Media:Variant_Calling_and_Filtering_for_INDELs.pdf|Variant Calling and Filtering for INDELs]] | | | [[Media:Variant_Calling_and_Filtering_for_INDELs.pdf|Variant Calling and Filtering for INDELs]] |
− | | [[SeqShop: Variant Calling and Filtering for INDELs Practical]] | + | | [[SeqShop: Variant Calling and Filtering for INDELs Practical, June 2014]] |
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| ! style="background:#ABE" | Wednesday Lecture !! style="background:#ABE" | Practical | | ! style="background:#ABE" | Wednesday Lecture !! style="background:#ABE" | Practical |
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| | [[Media:Analysis of SV.pdf|Analysis of Structural Variation - Part 1]] | | | [[Media:Analysis of SV.pdf|Analysis of Structural Variation - Part 1]] |
| [[Media:Seqshop_cnv_partb_2014_06.pdf|Analysis of Structural Variation - Part 2]] | | [[Media:Seqshop_cnv_partb_2014_06.pdf|Analysis of Structural Variation - Part 2]] |
− | | [[SeqShop: Analysis of Structural Variation Practical]] | + | | [[SeqShop: Analysis of Structural Variation Practical, June 2014]] |
− | ''[[SeqShop: Aligning Your Own Genome]]'' | + | ''[[SeqShop: Aligning Your Own Genome, June 2014]]'' |
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| ! style="background:#ABE" | Thursday Lecture !! style="background:#ABE" | Practical | | ! style="background:#ABE" | Thursday Lecture !! style="background:#ABE" | Practical |
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| | [[Media:Worshop2014-ancestry.pdf|Estimates of Genetic Ancestry]] | | | [[Media:Worshop2014-ancestry.pdf|Estimates of Genetic Ancestry]] |
− | | [[SeqShop: Estimates of Genetic Ancestry Practical]] | + | | [[SeqShop: Estimates of Genetic Ancestry Practical, June 2014]] |
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| | [[Media:Seqshop_cnv_partb_2014_06.pdf|Genetic Association Analysis]] | | | [[Media:Seqshop_cnv_partb_2014_06.pdf|Genetic Association Analysis]] |
− | | [[SeqShop: Genetic Association Analysis Practical]] | + | | [[SeqShop: Genetic Association Analysis Practical, June 2014]] |
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| ! style="background:#ABE" | Friday Lecture !! style="background:#ABE" | Practical | | ! style="background:#ABE" | Friday Lecture !! style="background:#ABE" | Practical |
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| | [[Media:2014.06_-_Workshop_Closing.pdf|Example of a Whole Genome Association Study]] | | | [[Media:2014.06_-_Workshop_Closing.pdf|Example of a Whole Genome Association Study]] |
− | | ''[[SeqShop: Friday - Practicing what we learned]]'' | + | | ''[[SeqShop: Friday - Practicing what we learned, June 2014]]'' |
| |} | | |} |