From Genome Analysis Wiki
Jump to navigationJump to search
252 bytes added
, 10:27, 2 February 2017
Line 1: |
Line 1: |
| + | '''Note:''' the latest version of this practical is available at: [[SeqShop: Genetic Association Analysis Practical]] |
| + | * The ones here is the original one from the June workshop (updated to be run from elsewhere) |
| + | |
| + | |
| + | == Introduction == |
| [[Media:Seqshop association 2014 06.pdf|View Lecture Slides]] | | [[Media:Seqshop association 2014 06.pdf|View Lecture Slides]] |
| | | |
Line 57: |
Line 62: |
| <div class="mw-collapsible-content"> | | <div class="mw-collapsible-content"> |
| | | |
− | This tutorial builds on the alignment & snpcall tutorials, if you have not already, please first run those tutorials: [[SeqShop:_Sequence_Mapping_and_Assembly_Practical|Alignment Tutorial]] & [[SeqShop: Variant Calling and Filtering for SNPs Practical|SNP Calling Tutorial]] | + | This tutorial builds on the alignment & snpcall tutorials, if you have not already, please first run those tutorials: [[SeqShop:_Sequence_Mapping_and_Assembly_Practical, June 2014|Alignment Tutorial]] & [[SeqShop: Variant Calling and Filtering for SNPs Practical, June 2014|SNP Calling Tutorial]] |
| | | |
| === Download & Build EPACTS === | | === Download & Build EPACTS === |
Line 65: |
Line 70: |
| cd ~/seqshop/ | | cd ~/seqshop/ |
| * download, decompress, and build the version of epacts that was tested with this tutorial: | | * download, decompress, and build the version of epacts that was tested with this tutorial: |
− | wget http://www.sph.umich.edu/csg/kang/epacts/download/EPACTS-3.2.6.tar.gz | + | wget http://csg.sph.umich.edu//kang/epacts/download/EPACTS-3.2.6.tar.gz |
| tar xvf EPACTS-3.2.6.tar.gz | | tar xvf EPACTS-3.2.6.tar.gz |
| cd EPACTS-3.2.6 | | cd EPACTS-3.2.6 |