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, 20:30, 7 December 2014
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| === Running GotCloud Genotype Refinement === | | === Running GotCloud Genotype Refinement === |
| Since everything is setup, just run the following command (very similar to snpcall). | | Since everything is setup, just run the following command (very similar to snpcall). |
− | ${GC}/gotcloud ldrefine --conf ${SS}/gotcloud.conf --numjobs 2 --region 22:36000000-37000000 --base_prefix ${SS} --outdir ${OUT} | + | ${GC}/gotcloud ldrefine --conf ${SS}/gotcloud.conf --numjobs 6 --region 22:36000000-37000000 --base_prefix ${SS} --outdir ${OUT} |
| | | |
| * Beagle will take about 1-3 minutes to complete | | * Beagle will take about 1-3 minutes to complete |