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#using textual VCF streams indicated by -
#using textual VCF streams indicated by -
cat view -h mills.vcf | vt normalize - -r hs37d5.fa | vt mergedups - -o out.bcf
cat view -h mills.vcf | vt normalize - -r hs37d5.fa | vt uniq - -o out.bcf
#using uncompressed BCF streams indicated by +
#using uncompressed BCF streams indicated by +
cat mills.vcf | vt normalize - -r hs37d5.fa -o + | vt mergedups + -o out.bcf
cat mills.vcf | vt normalize - -r hs37d5.fa -o + | vt uniq + -o out.bcf
In this example, the former took 0.84s while the latter took 0.64s to process. (24% speed up!)
In this example, the former took 0.84s while the latter took 0.64s to process. (24% speed up!)
