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, 00:25, 29 January 2015
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− | A typical Minimac3 command line would have the following parameter options: | + | = Introduction = |
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| + | [http://genome.sph.umich.edu/wiki/Minimac3 '''Minimac3 '''] is a lower memory and more computationally efficient implementation of [http://genome.sph.umich.edu/wiki/Minimac2 minimac2]. It is an algorithm for genotypic imputation that works on phased genotypes (say from [http://genome.sph.umich.edu/wiki/MaCH MaCH]) and is designed to handle very large reference panels in a more computationally efficient way with no loss of accuracy. |
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| + | This wiki page is designed to give users a detailed explanation on Minimac3 Usage. |
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| + | = Download = |
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| + | '''Minimac3 ''' is available as an undocumented release version. The source files are available for download here and commonly used reference panels in <code>M3VCF</code> format are available for download in [[#Reference Panels for Download | Reference Panels]]. |
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| + | * To Download Minimac3 |
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| + | {| class="wikitable" border="1" cellpadding="2" |
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| + | ! Description |
| + | ! Download Link |
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| + | | Minimac3 Executable |
| + | | [[Media : Minimac3.v1.0.0.binary.tar.gz | UNIX Users ]] |
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| + | | Minimac3-omp Executable (for parallel computing) |
| + | | [[Media : Minimac3.v1.0.0.binary-OMP.tar.gz | UNIX Users ]] |
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| + | | Minimac3 Source Files |
| + | | [[Media : Minimac3.v1.0.0.tar.gz | UNIX Users ]] |
| + | |}A typical Minimac3 command line would have the following parameter options: |
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| Command Line Options: | | Command Line Options: |
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| PhoneHome : --noPhoneHome, --phoneHomeThinning [50] | | PhoneHome : --noPhoneHome, --phoneHomeThinning [50] |
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| + | = Usage = |
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| The most typically used parameter options are explained below with [[#Examples|examples]]. See subsection below for detailed [[#List of Options |list of available options]]. | | The most typically used parameter options are explained below with [[#Examples|examples]]. See subsection below for detailed [[#List of Options |list of available options]]. |