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, 11:43, 20 February 2015
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| To install an official release, unpack the downloaded file (tar xvf), cd into the bamUtil_x.x.x directory and type make all. | | To install an official release, unpack the downloaded file (tar xvf), cd into the bamUtil_x.x.x directory and type make all. |
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− | * [[Media:BamUtil.1.0.12.tgz|BamUtil.1.0.12.tgz]] - Released 5/14/2014 | + | '''BamUtil.1.0.13 Release Notes''' |
| + | * BamUtil Version 1.0.13 - Released 2/20/2015 |
| + | ** https://github.com/statgen/bamUtil/archive/v1.0.13.tar.gz |
| + | ** Requires, but does not include: [[LibStatGen Download#Official Releases|libStatGen version 1.0.13]] |
| + | ** Makefule Updates |
| + | *** Improve logic to determine actual path for the library |
| + | *** Update to append to USER_COMPILE_VARS even if specified on the command line |
| + | ** Update [[BamUtil: writeRegion|writeRegion]] |
| + | *** Add option to specify readnames to keep in a file |
| + | *** Fixed bug that if a read overlapped 2 BED positions, it was printed twice |
| + | ** Update to [[BamUtil: bam2FastQ|bam2FastQ]] |
| + | *** Update to skip non-primary reads |
| + | ** Update to [[BamUtil: polishBam|polishBam]] |
| + | *** Update to handle '\t' string inputs and to add CO option |
| + | *** Fix MD5sum calculation to convert fasta to uppercase prior to calculating |
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− | '''BamUtil.1.0.12 Release Notes''' | + | '''Older Releases''' |
| * [[Media:BamUtil.1.0.12.tgz|BamUtil.1.0.12.tgz]] - Released 5/14/2014 | | * [[Media:BamUtil.1.0.12.tgz|BamUtil.1.0.12.tgz]] - Released 5/14/2014 |
| ** Requires, but does not include: [[LibStatGen Download#Official Releases|libStatGen version 1.0.12]] | | ** Requires, but does not include: [[LibStatGen Download#Official Releases|libStatGen version 1.0.12]] |
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| ** Update to [[BamUtil: squeeze|squeeze]], [[BamUtil: revert|revert]], [[BamUtil: diff|diff]] | | ** Update to [[BamUtil: squeeze|squeeze]], [[BamUtil: revert|revert]], [[BamUtil: diff|diff]] |
| *** Also accept ',' instead of just ';' as the delimiter in the input tags string. | | *** Also accept ',' instead of just ';' as the delimiter in the input tags string. |
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− | '''Older Releases'''
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| * [[Media:BamUtil.1.0.11.tgz|BamUtil.1.0.11.tgz]] - Released 2/28/2014 | | * [[Media:BamUtil.1.0.11.tgz|BamUtil.1.0.11.tgz]] - Released 2/28/2014 |