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''New Fugue'' is a program for estimation of haplotype frequencies and linkage disequilibrium coefficients in family data. The current implementation uses the methods described by Abecasis and Wigginton (2005) and originally implemented in the [http://www.sph.umich.edu/csg/abecasis/Merlin Merlin package].
== Download ==
A source file with the current distribution is available for download from this link: [http://www.sph.umich.edu/csg/abecasis/downloads/generic-new_fugue-2010-05-11.tar.gz generic-new_fugue-2010-05-11.tar.gz].
== References ==
Abecasis GR and Wigginton JE (2005). Handling marker-marker linkage disequilibrium: pedigree analysis with clustered markers. Am J Hum Genet 77:754-67
== Download ==
A source file with the current distribution is available for download from this link: [http://www.sph.umich.edu/csg/abecasis/downloads/generic-new_fugue-2010-05-11.tar.gz generic-new_fugue-2010-05-11.tar.gz].
== References ==
Abecasis GR and Wigginton JE (2005). Handling marker-marker linkage disequilibrium: pedigree analysis with clustered markers. Am J Hum Genet 77:754-67
