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, 21:24, 18 March 2015
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| ! Command-line Flag !! Configuration Key !! Value Description !! Default Value | | ! Command-line Flag !! Configuration Key !! Value Description !! Default Value |
| |- | | |- |
− | | --list/--bam_list/--bamlist ''file'' || BAM_LIST || path to the [[#BAM_LIST File|BAM_LIST File]] || $(OUT_DIR)/bam.list | + | | --list/--bam_list/--bamlist ''file'' || BAM_LIST || path to the [[#BAM_LIST File for recabQC|BAM_LIST File]] || $(OUT_DIR)/bam.list |
| |- | | |- |
| | --numjobs ''#'' || || number of jobs to run in parallel || 0 (generate Makefile of steps, but do not run) | | | --numjobs ''#'' || || number of jobs to run in parallel || 0 (generate Makefile of steps, but do not run) |