Changes

From Genome Analysis Wiki
Jump to navigationJump to search
Line 429: Line 429:  
  zcat ${OUT}/thunder/chr22/ALL/thunder/chr22.filtered.PASS.beagled.ALL.thunder.vcf.gz |grep "#CHROM"
 
  zcat ${OUT}/thunder/chr22/ALL/thunder/chr22.filtered.PASS.beagled.ALL.thunder.vcf.gz |grep "#CHROM"
 
* That will help you figure out it's genotype.
 
* That will help you figure out it's genotype.
* Rerun the tabix command and scroll to find HG00551's genotype:
+
* Rerun the tabix command and scroll to the right to find HG00551's genotype:
 
  ${GC}/bin/tabix ${OUT}/thunder/chr22/ALL/thunder/chr22.filtered.PASS.beagled.ALL.thunder.vcf.gz 22:36907000-36907100 |less -S
 
  ${GC}/bin/tabix ${OUT}/thunder/chr22/ALL/thunder/chr22.filtered.PASS.beagled.ALL.thunder.vcf.gz 22:36907000-36907100 |less -S
  
271

edits

Navigation menu