Changes

SeqShop: Variant Calling and Filtering for SNPs Practical, May 2015 (view source)

13 bytes added , 17:20, 15 May 2015

Line 429: Line 429:

zcat ${OUT}/thunder/chr22/ALL/thunder/chr22.filtered.PASS.beagled.ALL.thunder.vcf.gz |grep "#CHROM"

* That will help you figure out it's genotype.

−

* Rerun the tabix command and scroll to find HG00551's genotype:

+

* Rerun the tabix command and scroll to the right to find HG00551's genotype:

${GC}/bin/tabix ${OUT}/thunder/chr22/ALL/thunder/chr22.filtered.PASS.beagled.ALL.thunder.vcf.gz 22:36907000-36907100 |less -S

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