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, 17:20, 15 May 2015
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| zcat ${OUT}/thunder/chr22/ALL/thunder/chr22.filtered.PASS.beagled.ALL.thunder.vcf.gz |grep "#CHROM" | | zcat ${OUT}/thunder/chr22/ALL/thunder/chr22.filtered.PASS.beagled.ALL.thunder.vcf.gz |grep "#CHROM" |
| * That will help you figure out it's genotype. | | * That will help you figure out it's genotype. |
− | * Rerun the tabix command and scroll to find HG00551's genotype: | + | * Rerun the tabix command and scroll to the right to find HG00551's genotype: |
| ${GC}/bin/tabix ${OUT}/thunder/chr22/ALL/thunder/chr22.filtered.PASS.beagled.ALL.thunder.vcf.gz 22:36907000-36907100 |less -S | | ${GC}/bin/tabix ${OUT}/thunder/chr22/ALL/thunder/chr22.filtered.PASS.beagled.ALL.thunder.vcf.gz 22:36907000-36907100 |less -S |
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