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, 23:19, 18 May 2015
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| The discovery pipeline only performs discovery of variant sites with filtering. You will need to iterate BAMs again to perform genotyping. | | The discovery pipeline only performs discovery of variant sites with filtering. You will need to iterate BAMs again to perform genotyping. |
− | * If running on a small machine, you may want to reduce <code>--numjobs</code> from 4 to 1. | + | * If running on a small machine, you may want to reduce <code>--numjobs</code> from 8 to 1. |
− | perl ${GC}/bin/genomestrip.pl --run-genotype --metadata ${SS}/metadata --conf ${SS}/gotcloud.conf --numjobs 4 --base-prefix ${SS} --outdir ${OUT} | + | ${GC}/gotcloud genomestrip --run-genotype --metadata ${SS}/metadata --conf ${SS}/gotcloud.conf --numjobs 8 --base-prefix ${SS} --outdir ${OUT} |
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| This will take ~3 minutes to finish. | | This will take ~3 minutes to finish. |