Changes

Polymutt2 (view source)

711 bytes added , 23:21, 1 July 2015

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== Usage ==

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A command polymutt2 without any argument displays the following message

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pedfile : (-pname)

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datfile : (-dname)

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mapfile : (-mname)

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Additional Options

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Input : --in_vcf [], --in_range [], --mixed_vcf_records

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Mutation paramters : --theta_snv [1.0e-03], --theta_indel [1.0e-04],

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--tstv_ratio [2.00], --submap [1.00]

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Multi-threading : --nthreads [1]

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Output : --out_vcf [], --fam_idx, --fam_id [], --out_all,

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--out_range [], --best_marginal, --best_path

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Approximation : --cum_prob [1.00], --single_iv

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* NOTE: current version can only process one chromosome at a time

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