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150 bytes removed
, 16:51, 4 December 2015
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− | #annotates indels from VCFs with VNTR information. | + | #annotates variants that are overlapping |
− | vt annotate_indels in.vcf -r hs37d5.fa -o annotated.sites.vcf | + | vt remove_overlap in.vcf -r hs37d5.fa -o overlapped.tagged..vcf |
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| <div class="mw-collapsible-content"> | | <div class="mw-collapsible-content"> |
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− | remove_overlap v0.57
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− | description : Removes overlapping variants in a VCF file by tagging such variants with the FILTER flag overlap.
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| usage : vt remove_overlap [options] <in.vcf> | | usage : vt remove_overlap [options] <in.vcf> |
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