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359 bytes added
, 11:41, 27 June 2016
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| **** /net/sardinia/progenia/SardiNIA/VariantCalling_20150330/INDELCALL/filterIndels/FINAL/all.genotypes.PASS.vcf.gz | | **** /net/sardinia/progenia/SardiNIA/VariantCalling_20150330/INDELCALL/filterIndels/FINAL/all.genotypes.PASS.vcf.gz |
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| + | * Merged and sorted Indel and Beagled SNP VCFS: |
| + | ** /net/sardinia/progenia/SardiNIA/VariantCalling_20150330/SNPINDEL/chr*.PASS.beagled.vcf.gz |
| + | |
| + | * Indel and SNP VCFs that have been combined AND BEAGLED TOGETHER using Beagle4: |
| + | ** /net/sardinia/progenia/SardiNIA/VariantCalling_20150330/SNPINDEL/beagle4/beagle4_chr*/beagle4/chr*/chr*.filtered.PASS.beagled.vcf.gz |
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| * mtDNA Copy Number Summary | | * mtDNA Copy Number Summary |