From Genome Analysis Wiki
Jump to navigationJump to search
32 bytes added
, 11:44, 27 June 2016
Line 62: |
Line 62: |
| **** /net/sardinia/progenia/SardiNIA/VariantCalling_20150330/INDELCALL/filterIndels/FINAL/all.genotypes.PASS.vcf.gz | | **** /net/sardinia/progenia/SardiNIA/VariantCalling_20150330/INDELCALL/filterIndels/FINAL/all.genotypes.PASS.vcf.gz |
| | | |
− | * Merged Indel VCF with beagles SNP VCF, then sorted to get the following VCFS: | + | * Merged Indel VCF with beagles SNP VCF, then sorted to get the following VCFS: |
| ** /net/sardinia/progenia/SardiNIA/VariantCalling_20150330/SNPINDEL/chr*.PASS.beagled.vcf.gz | | ** /net/sardinia/progenia/SardiNIA/VariantCalling_20150330/SNPINDEL/chr*.PASS.beagled.vcf.gz |
| | | |
− | * Indel and SNP VCFs that have been combined AND BEAGLED AGAIN TOGETHER using Beagle4: | + | * Indel and SNP VCFs that have been combined AND BEAGLED AGAIN TOGETHER using Beagle4. '''These are the latest VCFS''': |
| ** /net/sardinia/progenia/SardiNIA/VariantCalling_20150330/SNPINDEL/beagle4/beagle4_chr*/beagle4/chr*/chr*.filtered.PASS.beagled.vcf.gz | | ** /net/sardinia/progenia/SardiNIA/VariantCalling_20150330/SNPINDEL/beagle4/beagle4_chr*/beagle4/chr*/chr*.filtered.PASS.beagled.vcf.gz |
| | | |