From Genome Analysis Wiki
Jump to navigationJump to search
913 bytes added
, 00:04, 13 November 2017
Line 9: |
Line 9: |
| | | |
| To install an official release, unpack the downloaded file (tar xvf), cd into the libStatGen directory and type <code>make all</code>. | | To install an official release, unpack the downloaded file (tar xvf), cd into the libStatGen directory and type <code>make all</code>. |
| + | |
| + | |
| + | '''LibStatGen.1.0.14 Release Notes''' |
| + | *Version 1.0.14 - Released 7/8/2015 |
| + | ** https://github.com/statgen/libStatGen/archive/v1.0.14.tar.gz |
| + | ** Contains classes for general processing (string, reference file, parameters), bam, glf, fastq, and vcf |
| + | *** General Updates: |
| + | **** Compiling Updates: |
| + | ***** PedigreeLoader.cpp - fix bool vs int definition |
| + | ***** InputFile - add 'const' to isOpen and ifeof methods. Also add comments about usage of 'operator >>' |
| + | *** Bam/Tabix Updates: |
| + | **** Update how the index is stored in memory to not preallocate the maximum number of bins for each reference as this could use a lot of memory if there are a lot of references |
| + | *** BAM Updates: |
| + | **** SamFilter |
| + | ***** Update to clear MapQ and N/A flags when marking as unmapped |
| + | ***** Fix bug in clipping logic that didn't properly adjust the start position if the read was already clipped |
| + | *** VCF Updates: |
| + | **** Add missing include for c++11 |
| | | |
| | | |