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, 13:18, 13 August 2010
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| The current implementation does not include support for X linked markers and should only be used with autosomal markers. | | The current implementation does not include support for X linked markers and should only be used with autosomal markers. |
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− | The current implementation looks for a pair of files called ''testCases.dat'' and ''testCases.ped'' in the current working directory. This pair of files specifies alternate relationships to be considered.
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| The current implementation simply reports the most likely relationship and the difference in likelihood between this relationship and the originally specified relationship. It would be better to use an E-M algorithm to calculate a prior probability for each relationship and to only report as problematic pairs where the posterior probability of a mis-specified relationship is high. | | The current implementation simply reports the most likely relationship and the difference in likelihood between this relationship and the originally specified relationship. It would be better to use an E-M algorithm to calculate a prior probability for each relationship and to only report as problematic pairs where the posterior probability of a mis-specified relationship is high. |