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52 bytes added
, 21:50, 13 December 2010
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| ### Convert the pedigree file into a MaCH haplotype file (missing genotypes should be encoded as: "0" or "." or "N" ) | | ### Convert the pedigree file into a MaCH haplotype file (missing genotypes should be encoded as: "0" or "." or "N" ) |
| | | |
− | ### '''<Example of a pedigree file >'''
| + | :::: '''<Example of a pedigree file >''' |
− | ### FAM1003 ID1234 0 0 M A/0 A/0 C/0
| + | :::: FAM1003 ID1234 0 0 M A/0 A/0 C/0 |
− | ### FAM1004 ID5678 0 0 M 0/0 C/0 G/0
| + | :::: FAM1004 ID5678 0 0 M 0/0 C/0 G/0 |
− | ### ...
| + | :::: ... |
− | ### '''<End of pedigree file>'''
| + | :::: '''<End of pedigree file>''' |
| | | |
| | | |
− | '''<Example of a phased haplotype file>'''
| + | :::: '''<Example of the corresponding haplotype file>''' |
− | FAM1003->ID1234 HAPLO1 AAC
| + | :::: FAM1003->ID1234 HAPLO1 AAC |
− | FAM1003->ID1234 HAPLO2 AAC
| + | :::: FAM1003->ID1234 HAPLO2 AAC |
− | FAM1004->ID5678 HAPLO1 0CG
| + | :::: FAM1004->ID5678 HAPLO1 0CG |
− | FAM1004->ID5678 HAPLO2 0CG
| + | :::: FAM1004->ID5678 HAPLO2 0CG |
− | ...
| + | :::: ... |
− | '''<End of phased haplotype file>'''
| + | :::: '''<End of the corresponding haplotype file>''' |
| | | |
| ### Impute using minimac as described above. | | ### Impute using minimac as described above. |