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Revision as of 18:05, 10 February 2011
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This page documents how to impute 1000 Genome SNPs using
This page documents how to impute 1000 Genome SNPs using
* MaCH (concurrent phasing approach)
* MaCH (concurrent phasing approach).
* or minimac (pre-phasing approach).
* or minimac (pre-phasing approach).
== Shoud I use MaCH or minimac?
The imputation quality of both approaches is comparable.
If you are carrying out only an one-time imputation and you are focusing only on autosomes - then go with MaCH.
If you are planning to re-impute into new reference panels and your are interested into the X-chromosome - then minimac is the right choice for you.
