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6. Visualize alignment to reference genome
 
6. Visualize alignment to reference genome
 +
${BIN}/samtools-hybrid index ${OUT}/NA12878.exon.sample.deduped.bam
 
  ${BIN}/samtools-hybrid tview ${OUT}/NA12878.exon.sample.deduped.bam ${REF}/human_g1k_v37_chr20.fa
 
  ${BIN}/samtools-hybrid tview ${OUT}/NA12878.exon.sample.deduped.bam ${REF}/human_g1k_v37_chr20.fa
    
* Type 'g', and 20:19989392  
 
* Type 'g', and 20:19989392  
 
* TYPE 'g', and 20:20032998
 
* TYPE 'g', and 20:20032998

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