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Sequence Analysis Practice 2011/03/09 (view source)

Revision as of 17:32, 9 March 2011

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== Steps ==
 
== Steps ==
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[[Media:Hmkang-20110309-practical.pdf | Low-level Processing - Practical Slides (PDF)]]
    
0. SETTING UP ENVIRONMENTAL VARIABLES
 
0. SETTING UP ENVIRONMENTAL VARIABLES
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4. View SAM/BAM format
 
4. View SAM/BAM format
 
  ${BIN}/samtools-hybrid view -h ${OUT}/NA12878.exon.sample.merged.bam | less
 
  ${BIN}/samtools-hybrid view -h ${OUT}/NA12878.exon.sample.merged.bam | less
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5. Mark Duplicate Reads
 
5. Mark Duplicate Reads
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