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LocusZoom Standalone (view source)

Revision as of 17:52, 29 July 2011

495 bytes removed ,  17:52, 29 July 2011
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=== Batch mode  ===
 
=== Batch mode  ===
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LocusZoom provides two fast methods for generating plots for a large number of regions:  
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LocusZoom provides a batch mode for generating plots for a large number of regions:  
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*<code>--hits </code>, which parses a file for SNP names (rs#) and creates a plot for each one.
   
*<code>--hitspec </code>, which reads a batch mode specification file.
 
*<code>--hitspec </code>, which reads a batch mode specification file.
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To use <code>--hits</code>, you need only provide any text file that has SNP names (of the rs### variety) present in the file. LocusZoom will extract SNPs from this file, regardless of formatting. Note that this file shouldn't be very large, or the parsing procedure could take a long time.
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For this option, you must provide a text file of the following format:  
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For a more thorough specification of each plot you would like to create, use <code>--hitspec</code>. For this option, you must provide a text file of the following format:  
      
{| width="75%" cellspacing="0" cellpadding="5" border="1"
 
{| width="75%" cellspacing="0" cellpadding="5" border="1"
Welchr
239

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