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, 16:24, 10 August 2011
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| = Association Analysis = | | = Association Analysis = |
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− | If you got this far, the final step is to run SNPTEST or another appropriate tool using the imputation results as input. | + | If you got this far, the final step is to run SNPTEST or another appropriate tool using the imputation results as input. |
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| + | If you are running SNP test, two useful pieces of advice are to: |
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| + | * Concatenate the dosage files for each chromosome (so that you have a 22 files to manage rather than several hundred). |
| + | * Remember that the per SNP imputation accuracy score (IMPUTE's ''INFO'' field) is calculate by SNPTEST and will be present in the SNPTEST output. |