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60 bytes added
, 14:32, 4 October 2011
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| --noeof : do not expect an EOF block on a bam file. | | --noeof : do not expect an EOF block on a bam file. |
| --params : print the parameter settings | | --params : print the parameter settings |
| + | --recover : attempt to recover the input bam file. |
| Optional Sequence Parameters (only specify one): | | Optional Sequence Parameters (only specify one): |
| --seqOrig : Leave the sequence as is (default & used if reference is not specified). | | --seqOrig : Leave the sequence as is (default & used if reference is not specified). |
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| Sequence with Bases: AATAACTAGATAGGG | | Sequence with Bases: AATAACTAGATAGGG |
| Sequence with Equals: AA======G===GGG | | Sequence with Equals: AA======G===GGG |
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| = Usage = | | = Usage = |