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*[[BamUtil: revert|Revert]] - Revert SAM/BAM replacing the specified fields with their previous values (if known) and removes specified tags
*[[BamUtil: revert|Revert]] - Revert SAM/BAM replacing the specified fields with their previous values (if known) and removes specified tags
*[[BamUtil: squeeze|Squeeze]] - Reduce files size by dropping OQ fields, duplicates, specified tags, using '=' when a base matches the reference, binning quality scores, and replacing readNames with unique integers
*[[BamUtil: squeeze|Squeeze]] - Reduce files size by dropping OQ fields, duplicates, specified tags, using '=' when a base matches the reference, binning quality scores, and replacing readNames with unique integers
*[[BamUtil: clipOverlap|ClipOverlap]] - Clip overlapping read pairs so they do not overlap
==== Helper Tools to Print Readable Information ====
==== Helper Tools to Print Readable Information ====
