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, 22:20, 19 December 2011
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| * First, modify <code>UMAKE_ROOT, INPUT_ROOT, OUTPUT_ROOT</code> parameters accordingly. | | * First, modify <code>UMAKE_ROOT, INPUT_ROOT, OUTPUT_ROOT</code> parameters accordingly. |
− | * You need to run all commands under the <code>EXAMPLE_HOME</code> folder | + | * You need to run all following commands under the <code>EXAMPLE_HOME</code> folder. After each perl script is done, run the two make commands printed from the perl script. |
| * Second, perform SNP calling procedure using the following command | | * Second, perform SNP calling procedure using the following command |
| perl $(UMAKE_HOME)/scripts/umake.pl --snpcall | | perl $(UMAKE_HOME)/scripts/umake.pl --snpcall |