3,045
edits
Changes
From Genome Analysis Wiki
Jump to navigationJump to search→Output
<code>DETAILED</code> records have 6 additional fields:
<code>DETAILED</code> records have 6 additional fields:
# numBases - the number of bases at this position
# numBases - the number of bases at this position
# bases - the bases at this position. String of ACTGND characters that is numBases long. ('D' represents a deletion.)
# bases - the bases at this position. String of ACTGND characters that is numBases long. ('D' represents a deletion)
# qualities - the qualities at this position. String of characters representing the qualities that is numBases long. (' ' represents the quality of a deletion)
# qualities - the qualities at this position. String of characters representing the qualities that is numBases long. (' ' represents the quality of a deletion)
# cycles - the cycles for this position. There are numBases cycles, separated by a ':'.
# cycles - the cycles for this position. There are numBases cycles, separated by a ':'. (-1 represents the cycle of a deletion)
# strands - the strands for this position. Sequence of numBases 0's and 1's. 0 represents forward strand and 1 represents reverse strand.
# strands - the strands for this position. Sequence of numBases 0's and 1's. 0 represents forward strand and 1 represents reverse strand.
# mqs - the mapping qualities for this position. There are numBases mapping qualities, separated by a ':'.
# mqs - the mapping qualities for this position. There are numBases mapping qualities, separated by a ':'.
