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== RGMergeBAM : Merge multiple BAM files appending ReadGroup IDs==
= Overview of the <code>rgMergeBam</code> function of <code>bamUtil</code> =
The <code>rgMergeBam</code> option on the [[bamUtil]] executable merges multiple BAM files appending ReadGroup IDs.
rgMergeBam merges multiple sorted BAM files into one BAM file like 'samtools merge' command, but merges BAM headers.
rgMergeBam merges multiple sorted BAM files into one BAM file like 'samtools merge' command, but merges BAM headers.
= Usage=
<pre>
<pre>
rgMergeBam [-v] [--log logFile] --list <listFile> --out <outFile>
./bam rgMergeBam [-v] [--log logFile] --list <listFile> --out <outFile>
</pre>
=Parameters=
<pre>
Required parameters :
Required parameters :
--out/-o : Output BAM file (sorted)
--out/-o : Output BAM file (sorted)
</pre>
</pre>
[[Category:BamUtil|rgMergeBam]]
[[Category:BAM Software]]
[[Category:Software]]
[[Category:Software]]
