From Genome Analysis Wiki
Jump to navigationJump to search
186 bytes added
, 14:53, 3 April 2012
Line 59: |
Line 59: |
| ** [[BamUtil: squeeze|'''squeeze''' - Reduce file size by dropping OQ fields, duplicates, specified tags, using '=' when a base matches the reference, binning quality scores, and replacing readNames with unique integers]] | | ** [[BamUtil: squeeze|'''squeeze''' - Reduce file size by dropping OQ fields, duplicates, specified tags, using '=' when a base matches the reference, binning quality scores, and replacing readNames with unique integers]] |
| ** [[BamUtil: trimBam|'''trimBam''' - Trim end of reads, changing read ends to ‘N’ & quality to ‘!’]] | | ** [[BamUtil: trimBam|'''trimBam''' - Trim end of reads, changing read ends to ‘N’ & quality to ‘!’]] |
| + | **[[BamUtil: polishBam|'''polishBam''' – Add/Update header lines & add RG tag to each record]] |
| + | **[[BamUtil: rgMergeBam|'''rgMergeBam''' – Merge sorted BAM files adding Read Groups]] |
| | | |
| * Informational Tools | | * Informational Tools |