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114 bytes added
, 08:40, 20 April 2012
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| == using a VCF reference panel == | | == using a VCF reference panel == |
| minimac --vcfReference --refHaps ref.vcf.gz --refSnps ref.snps.gz --haps target.hap.gz --snps target.snps.gz --rounds 5 --states 200 --prefix results | | minimac --vcfReference --refHaps ref.vcf.gz --refSnps ref.snps.gz --haps target.hap.gz --snps target.snps.gz --rounds 5 --states 200 --prefix results |
| + | Note: GWAS SNPs (file --snps target.snps.gz) have to be in the chr:pos format e.g. 1:1000 and on build37/hg19 |
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| == using a MaCH reference panel == | | == using a MaCH reference panel == |
| minimac --refHaps ref.hap.gz --refSnps ref.snps.gz --haps target.hap.gz --snps target.snps.gz --rounds 5 --states 200 --prefix results | | minimac --refHaps ref.hap.gz --refSnps ref.snps.gz --haps target.hap.gz --snps target.snps.gz --rounds 5 --states 200 --prefix results |
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