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== 5. Report EPACTS results<br> ==
== 5. Report EPACTS results<br> ==
For analyses B and C, please upload the two .epacts.gz files to the FTP server:
For analyses 2 and 3, please upload the three.epacts.gz files to the FTP server:
#'''Firth test (no BMI): ''' DIAGRAMv4_iSNPs_XXX_1000G_KKK_FBC_YYY_ZZZ.epacts.gz
#'''Firth test (with BMI):''' DIAGRAMv4_iSNPs_XXX_adjBMI_1000G_KKK_FBC_YYY_ZZZ.epacts.gz
#'''Score test (chr 20, no BMI): '''DIAGRAMv4_iSNPs_XXX_1000G_KKK_SCR_YYY_ZZZ.epacts.gz
Here's an example score test .epacts file
Here's an example score test .epacts file
*PVALUE : P-value
*PVALUE : P-value
The rest of columns varies by statistical tests. For example, in b.score test, SCORE represents score test statistics, N.CASE and N.CTRL represents the case/control counts, and AF.CASE and AF.CTRL represents the case/control allele frequencies.
The rest of columns varies by statistical tests. For example, in b.score test, SCORE represents score test statistics, N.CASE and N.CTRL represents the case/control counts, and AF.CASE and AF.CTRL represents the case/control allele frequencies.
