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→Software Download and Installation
=== Where to Download ===
=== Where to Download ===
* The source package for Linux and Mac can be downloaded here: [[Media:RareMetalWorker.0.0.5.tgz|software package download]]
* The source package for Linux and Mac can be downloaded here: [[Media:RareMetalWorker.0.0.6.tgz|software package download]]
* Save it to your local path and decompress using the following command:
* Save it to your local path and decompress using the following command:
tar xvzf RareMetalWorker.0.0.5.tgz
tar xvzf RareMetalWorker.0.0.6.tgz
* For UM CSG cluster users, no installation is needed. It is available at /net/fantasia/home/sfengsph/code/Rare-Metal/RareMetalWorker/bin/Rare-Metal-Worker
* For UM CSG cluster users, no installation is needed. It is available at /net/fantasia/home/sfengsph/code/Rare-Metal/RareMetalWorker/bin/Rare-Metal-Worker
=== How to Compile ===
=== How to Compile ===
* Go to /RareMetalWorker_0.0.5/RareMetalWorker/src and use the following command:
* Go to /RareMetalWorker_0.0.6/RareMetalWorker/src and use the following command:
make all
make all
=== How to Execute ===
=== How to Execute ===
* To execute the program, go to /RareMetalWorker_0.0.5/RareMetalWorker/bin, then the program can be executed by ./Rare-Metal-Worker.
* To execute the program, go to /RareMetalWorker_0.0.6/RareMetalWorker/bin, then the program can be executed by ./Rare-Metal-Worker.
* An example command line for a related sample when you have genotype info saved in VCF file is as following:
* An example command line for a related sample when you have genotype info saved in VCF file is as following:
./Rare-Metal-Worker --ped your.pheno.ped --dat your.pheno.dat --vcf your.geno.vcf.gz --useCovariates --inverseNormal --prefix your.study
./Rare-Metal-Worker --ped your.pheno.ped --dat your.pheno.dat --vcf your.geno.vcf.gz --useCovariates --inverseNormal --prefix your.study
