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Tutorial: GotCloud (view source)

No change in size , 16:36, 4 March 2013

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== STEP 6 : Run GotCloud Association Analysis Pipeline ==

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TBD/epacts single --vcf $GCOUT/vcfs/chr20/chr20.filtered.vcf.gz --ped $GCDATA/test.GBR60.ped --out $GCOUT/epacts \\

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TBD/epacts single --vcf $GCOUT/vcfs/chr20/chr20.filtered.vcf.gz --ped $GCDATA/test.GBR60.ped \\

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--test q.linear --run 1 --top 1 --chr 20

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--out $GCOUT/epacts --test q.linear --run 1 --top 1 --chr 20

Upon successful run, you will see files starting with $GCOUT/epacts

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