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105 bytes added
, 22:35, 5 March 2013
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| == STEP 6 : Run GotCloud Association Analysis Pipeline (EPACTS) == | | == STEP 6 : Run GotCloud Association Analysis Pipeline (EPACTS) == |
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− | If you need to install EPACTS, please refer to the documentation at [[EPACTS#Installation_Details]] | + | We will assume that the EPACTS are installed in the following directory |
| + | setenv EPACTS /path/to/epacts |
| + | (If you need to install EPACTS, please refer to the documentation at [[EPACTS#Installation_Details]]) |
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| $EPACTS/epacts single --vcf $GCOUT/vcfs/chr20/chr20.filtered.vcf.gz --ped $GCDATA/test.GBR60.ped \\ | | $EPACTS/epacts single --vcf $GCOUT/vcfs/chr20/chr20.filtered.vcf.gz --ped $GCDATA/test.GBR60.ped \\ |