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, 02:06, 16 April 2013
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| == Updates == | | == Updates == |
− | The latest version of 0.13 is available for [[#Download | Download]]. | + | The latest version of 0.14 is available for [[#Download | Download]]. |
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| + | v0.14 implemented both inherited variant calling and de novo mutation detection from VCF input files. If you have a VCF file with PL or GL fields, you can run polymutt on the VCF file to quickly and conveniently call variant and mutations. |
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| v0.13 fixed the bug for generating genotypes when the input is a VCF file and the ped file contains only a single nuclear family. Like unrelated samples (e.g. [[http://gatkforums.broadinstitute.org/discussion/1186/best-practice-variant-detection-with-the-gatk-v4-for-release-2-0 GATK]] recommends at least 30 samples), it is also desirable to use more families or mixture of families and unrelated samples for polymutt. | | v0.13 fixed the bug for generating genotypes when the input is a VCF file and the ped file contains only a single nuclear family. Like unrelated samples (e.g. [[http://gatkforums.broadinstitute.org/discussion/1186/best-practice-variant-detection-with-the-gatk-v4-for-release-2-0 GATK]] recommends at least 30 samples), it is also desirable to use more families or mixture of families and unrelated samples for polymutt. |