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, 14:05, 10 May 2013
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| If you do not see these <code>.OK</code> files, then your Alignment Pipeline failed. | | If you do not see these <code>.OK</code> files, then your Alignment Pipeline failed. |
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− | On success, the bams/ directory contains the final BAMs, bais, and md5s. | + | On success, the bams/ directory contains the final BAMs and bais. |
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| If processing fails part way through, you can pick up where you left off by rerunning gotcloud or the make command. | | If processing fails part way through, you can pick up where you left off by rerunning gotcloud or the make command. |