Changes

BAM files are compress by BGZF algorithm and it should contain EOF by default. QPLOT will by default stop working when it does not found a valid EOF tag inside BAM files.  

BAM files are compress by BGZF algorithm and it should contain EOF by default. QPLOT will by default stop working when it does not found a valid EOF tag inside BAM files.  

However, you can force QPLOT to continue process using --noeof. But you should be award the input files may be corrupted.

However, you can force QPLOT to continue process using --noeof. But you should be aware the input files may be corrupted.